Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs11644091 | chr16:20777932 | C/T | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs11644530 | chr16:20712837 | A/G | 4.12E-5 | 486 | 16.38 | 14.5 | 17.65 | KM Plot |
| THCA | rs11645111 | chr16:20731013 | C/T | 3.4E-5 | 489 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs116456115 | chr16:84117859 | G/A | 0 | 479 | 15.23 | 18.63 | 5.8 | KM Plot |
| THCA | rs11645969 | chr16:20773764 | C/T | 3.38E-5 | 490 | 16.37 | 14.63 | 17.65 | KM Plot |
| THCA | rs11646463 | chr16:20761804 | C/T | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |
| THCA | rs11646755 | chr16:20790095 | C/T | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs11647115 | chr16:2926415 | C/T | 0.000209 | 482 | 15.2 | 16.83 | 15.4 | KM Plot |
| THCA | rs11647225 | chr16:20727364 | G/A | 3.4E-5 | 489 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs11647477 | chr16:20774919 | G/A | 3.4E-5 | 489 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs11648835 | chr16:20809283 | C/A | 9.15E-5 | 490 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs11648920 | chr16:20715718 | C/T | 4.12E-5 | 486 | 16.38 | 14.5 | 17.65 | KM Plot |
| THCA | rs11649221 | chr16:2926549 | A/G | 0.000209 | 482 | 15.2 | 16.83 | 15.4 | KM Plot |
| THCA | rs11649682 | chr16:20734520 | A/C | 3.4E-5 | 489 | 16.38 | 14.63 | 17.65 | KM Plot |
| THCA | rs116510005 | chr5:1611425 | T/G | 3.91E-8 | 484 | 15.48 | 16.47 | 18.97 | KM Plot |